Spent some more time at the workshop today and progress is thus:
Brake Stopper bolt reduced to facilitate fitting of the new charge pipe and BOV. The Tower Strut Brace will fit after the WTA install is completed.
Re-orientation of the charge pipe to keep the Brake Stopper in place has seen the sc unit outlet and charge pipe inlet come too close together to the point where the charge pipe aluminium section will protrude inside the bend radius of the silicone hose. Tomorrow, they will trim the aluminium charge pipe section back to ensure a smooth bend through the silicone hose.
Exhaust will need new flanges to mate the HiTech mufflers to the xForce Y pipe. Also as the 3.0 inch version is not meant for a 3.0R, the flexible flange alignment at the 3rd CAT will need to be rotated when they make the replacement section for the 3rd CAT.
Water reservoir siting has been agreed and will be mounted just under the tower strut brace using existing holes in the tower.
I have chosen some different style hose clamps for the larger diameter silicon and also opted for a Nomex Silicon hose where possible.
A full custom sc unit air intake section is under construction. It will use the existing pod but with 83mm (3.25 inch) size tubing all the way to the sc unit. Some metal trimming in the inner guard will be done to ensure a smooth intake pipe all the way.
Received the Kartboy Pitch Stop mount today from Nick at ENTRA Imports. Top bloke and great if you absolutely needs bushes, shift kits and lots of other goodies. The new mount went in today before they put the WTA in place. Just as well too as the stock one had at least one split rubber bush.
Happy with the progress given they only work on the car half of each day. Photos:

This is a shot of the silicone pad that has been installed on the unused plenum chamber mount. It provides vertical padding for the WTA Cooler should it try to touch the old mount.

This is the finished Transmission Oil Cooler relocation. They only had to trim a very small triangular section off the foam block so the inner front bar will not need any trimming.

You should recognise this bit? An expensive shiny hunk of metal from xForce but as it was designed for the GT, some additional work required for the 3.0R to fit.

This pic shows how close the sc unit outlet is to the charge pipe inlet. The radius of the silicone hose is larger than the gap, so the aluminium section on the charge pipe will be trimmed back to fit.

This pic shows the brake stopper under the BOV, but fits well now. Also the tower strut brace fits nicely with enough room for the WTA to move a little with the engine.

A wider shot of the engine bay while work is in progress (in the top RH corner)

Barry hard at work while some tourist is takin photos!

Oops, that would be me....
Well, more updates tomorrow if I make it in time from the CBD.