Most people cut their covers (i.e. just keep the front half). But remember your intercooler is 2-3" thick so you can make use of that space before it becomes an issue - you might need to be careful of the bends in the FMIC piping.
Thanks for the response fellas! Always gotta be one cock though. I have my eye on one off ebay, but love the look of the cover, wanted to keep the engine bay some what stock looking.
2005 GT Liberty Wagaon, King Springs, 20'' K-Speed Biaggi's.