Hey Dan,
In my humble opinion I don't believe going from the single Kenwood head unit that's in the 2.5 to the McIntosh system is a worthwhile proposition.
Although it's immediately apparent there is a sonic difference between the two systems when properly kitted out I wouldn't necessarily say it's a stark improvement as such, more like a different kind of improvement.
I would expect that the wiring between the two systems would be different ( although there will be similarities ) considering your existing head unit doesn't have a separate amp and only drives 6 speakers ( really only 4 ) whilst the McIntosh has a separate BALANCED amp under the passenger seat that drives 13 speakers ( really only 9 ).
If you are intent on going down the route of purchasing that McIntosh system on ebay, please make sure the under seat amp is included, other wise you'll be on another mission to track down the amp. But more importantly, also make sure they supply the wiring harness that connects the under seat amp to the McIntosh head unit too !
All shortcomings aside with the McIntosh, please keep in mind that it was designed "sonically" or tuned with the type and amount of speakers and subwoofer that are fitted in the GT and 3.0 in mind. So if you just wire up the McIntosh in your car with the existing speakers or aftermarket ones, you'll have to spend some time experimenting to get the overall sound to sound "right".
You don't have to go all out like I or some of the others here have done. The key is making an informed choice based around a budget/sound quality you're hoping to achieve or willing to live with.
Nytrojen has shown what can be achieved on a restricted budget and even when I owned a 2.5 sedan, my system fitout in that had a single DIN JVC head unit that was powering a pair of 6.5 inch Clarion splits in the front and a pair of Pioneer 6 inch two ways in the rear with great results. See here ->
http://forum.liberty.asn.au/viewtopic.p ... 75&start=0[url][/url]
Good luck with your project.